BME 780 Tutorial

This repository contains the Jupyter notebook and supporting code for my final tutorial in BME 780 on dimensionality reduction.

Primary tutorial files

• dimensionality reduction tutorial.ipynb
  Jupyter notebook containing the tutorial and runnable code.
• dimensionality reduction tutorial.html
  Static HTML rendering of the notebook (viewable without a Jupyter server).

Supporting code and data

• data/
  Expression matrix and cell labels from the Tran et al. dataset.
• dimensionality reduction tutorial appendix.ipynb
  Jupyter notebook containing the code used to generate the figures in the Background and Algorithms section. This code wasn't directly relevant and I thought it would clutter the tutorial.
• figs/
  Supplemental figures generated from the appendix; used in the Background and Algorithms sections.