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spacetx

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  1. starfish starfish Public

    starfish: unified pipelines for image-based transcriptomics

    Python 221 67

  2. slicedimage slicedimage Public

    Python 7 2

  3. spacetx-research spacetx-research Public

    Contains research projects related to image-based transcriptomics assays

    Jupyter Notebook 5

  4. sptx-format sptx-format Public archive

    Image data format specification for spaceTx

    Python 3 2

  5. spacetx-writer spacetx-writer Public

    Convert supported filesets to the SpaceTx format

    Java 3 1

  6. segment_and_map segment_and_map Public

    This repo includes scripts for segmenting spacetx data sets and mapping the results to a reference RNA-seq data set.

    HTML 2

Repositories

Showing 10 of 13 repositories
  • starfish Public

    starfish: unified pipelines for image-based transcriptomics

    spacetx/starfish’s past year of commit activity
    Python 221 MIT 67 158 (2 issues need help) 23 Updated May 28, 2024
  • spacetx.github.io Public

    SpaceTx website

    spacetx/spacetx.github.io’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 14, 2023
  • spacetx-hca-flattener Public
    spacetx/spacetx-hca-flattener’s past year of commit activity
    Python 0 MIT 0 0 2 Updated Dec 26, 2022
  • spacetx-biohub-writer Public

    Conversion tool from biohub's DB format to spacetx format

    spacetx/spacetx-biohub-writer’s past year of commit activity
    Python 0 MIT 1 0 1 Updated Nov 15, 2021
  • spacetx-research Public

    Contains research projects related to image-based transcriptomics assays

    spacetx/spacetx-research’s past year of commit activity
    Jupyter Notebook 5 0 22 4 Updated May 26, 2021
  • slicedimage Public
    spacetx/slicedimage’s past year of commit activity
    Python 7 MIT 2 8 0 Updated May 26, 2020
  • starfish-workflows Public

    Solutions for running at-scale workflows with starfish

    spacetx/starfish-workflows’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 15, 2019
  • starfish-analysis Public

    Contains analyses executed using the starfish package

    spacetx/starfish-analysis’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jun 3, 2019
  • spacetx-writer Public

    Convert supported filesets to the SpaceTx format

    spacetx/spacetx-writer’s past year of commit activity
    Java 3 GPL-2.0 1 6 0 Updated Apr 24, 2019
  • segment_and_map Public

    This repo includes scripts for segmenting spacetx data sets and mapping the results to a reference RNA-seq data set.

    spacetx/segment_and_map’s past year of commit activity
    HTML 2 0 0 0 Updated Apr 11, 2019
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